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SLAC

SLAC usage summary as of Tue Sep 21 00:00:02 2021 PST.

TimeframeAnalysesSequencesSitesCPU time
TotalPer 24 hrsMeanMedianRangeMeanMedianRangeMeanMedianRange
Last 1 days0
Last 7 days0
Last 30 days0
Lifetime (3957 days)92479 23.37 53.07253-684 490.953251-11903 21.25 6.16 0.16- 7571.98

Top 10

Models usedTest results by p-value
ModelTimes Used% Used
HKY8547511 51.4
TRN9313462 14.6
REV9543 10.3
F814265 4.6
0102301079 1.2
0120121076 1.2
0122121060 1.1
0102321010 1.1
012232856 0.9
012032760 0.8
p-valueSelected/100 codonsTimes Used% Used
PositiveNegative
0.1 0.6 16.277137 83.4
0.05 0.5 14.111486 12.4
0.2 0.9 18.41381 1.5
0.25 2.2 24.8776 0.8
0.5 4.3 55.2659 0.7
0.01 0.8 9.6540 0.6
0.15 2.2 15.2115 0.1
0.3 0.2 18.151 0.1
0.0024 0.0 2.345 0.0
0.0048 0.0 0.533 0.0

FEL

FEL usage summary as of Tue Sep 21 00:00:13 2021 PST.

TimeframeAnalysesSequencesSitesCPU time
TotalPer 24 hrsMeanMedianRangeMeanMedianRangeMeanMedianRange
Last 1 days0
Last 7 days73 10.43 29.60153-229 606.6652538-4402 63.82373-493
Last 30 days116 3.87 48.41163-388 583.05 460.5038-4402 99.53 28.502-2397
Lifetime (3057 days)104127 34.06 44.59243-787 488.223251-11276 182.54460-51470

Top 10

Models usedTest results by p-value
ModelTimes Used% Used
HKY8547363 45.5
REV13384 12.9
TRN9310160 9.8
F815451 5.2
0100003929 3.8
0102322094 2.0
0120121584 1.5
0122121405 1.3
0102301270 1.2
0120321005 1.0
p-valueSelected/100 codonsTimes Used% Used
PositiveNegative
0.1 1.1 23.984203 80.9
0.05 0.9 19.115396 14.8
0.2 2.1 29.72137 2.1
0.25 3.1 31.9942 0.9
0.01 0.4 14.6524 0.5
0.5 6.0 43.1215 0.2
0.15 2.2 22.9182 0.2
0.0024 0.0 7.0102 0.1
0.3 1.2 23.364 0.1
0.06 0.3 22.560 0.1

REL

REL usage summary as of Tue Sep 21 00:00:27 2021 PST.

TimeframeAnalysesSequencesSitesCPU time
TotalPer 24 hrsMeanMedianRangeMeanMedianRangeMeanMedianRange
Last 1 days1 1.00777-7385385385-385232323-23
Last 7 days2 0.29 8.50 8.507-10 309.50 309.50234-385181813-23
Last 30 days8 0.27 22.50143-73 489.12 309.5063-1252 142.25572-561
Lifetime (3056 days)58299 19.08 20.71162-110 488.383231-11542 389.391110-54132

Top 10

Models usedTest results by Bayes Factor
ModelTimes Used% Used
HKY8531024 53.2
REV5722 9.8
F813549 6.1
TRN933373 5.8
0100002345 4.0
0120121239 2.1
001101730 1.3
012212720 1.2
010232709 1.2
012032623 1.1
Bayes FactorSelected/100 codonsTimes Used% Used
PositiveNegative
50 4.3 27.852693 90.4
100 4.4 22.11322 2.3
90 19.2 11.2901 1.5
20 7.2 36.0826 1.4
95 2.4 31.6783 1.3
10 5.8 31.7750 1.3
40 2.5 24.4145 0.2
25 7.8 34.7115 0.2
80 3.0 28.9111 0.2
30 9.8 20.693 0.2

TOGGLE

Toggle usage summary as of Tue Sep 21 00:00:34 2021 PST.

TimeframeAnalysesSequencesSitesCPU time
TotalPer 24 hrsMeanMedianRangeMeanMedianRangeMeanMedianRange
Last 1 days0
Last 7 days0
Last 30 days0
Lifetime (4137 days)1092 0.26 47.53377-150 568.7335016-3789 3765.88 1970.5031-42841

Model Select.

ModelSelection usage summary as of Tue Sep 21 00:00:35 2021 PST.

TimeframeAnalysesSequencesSites
TotalPer 24 hrsMeanMedianRangeMeanMedianRange
Last 1 days0
Last 7 days62 8.86 28.58144-137 679.76 292.5038-7094
Last 30 days66 2.20 28.62144-137 654.58 292.5038-7094
Lifetime (3057 days)102760 33.61 43.79223-656 523.183251-11935

Top 10 Models

ModelTimes selected% selected
HKY8524669 24.0
TRN9313108 12.8
F818990 8.7
0102324383 4.3
0120123617 3.5
0122123102 3.0
0102302487 2.4
0120322439 2.4
0122322437 2.4
0011012120 2.1

Protein Model Select.

ModelSelectionP usage summary as of Tue Sep 21 00:00:45 2021 PST.

TimeframeAnalysesSequencesSites
TotalPer 24 hrsMeanMedianRangeMeanMedianRange
Last 1 days0
Last 7 days1 0.14464646-46355135513551-3551
Last 30 days41 1.37 40.15394-93 9652.3498053551-9812
Lifetime (4858 days)4091 0.84 46.48262-500 987.694633-18120

Top 10 Models

ModelTimes selected% selected
JTT (Jones,Taylor,Thornton)+F567 13.9
JTT (Jones,Taylor,Thornton)410 10.0
HIV (within host)+F335 8.2
BLOSUM62+F329 8.0
WAG (Whelan and Goldman)+F326 8.0
IAV (Influenza A virus)+F306 7.5
WAG (Whelan and Goldman)245 6.0
IAV (Influenza A virus)228 5.6
HIV (between hosts)+F178 4.4
BLOSUM62169 4.1

GARD

GARD usage summary as of Tue Sep 21 00:00:46 2021 PST.

TimeframeAnalysesSequencesSitesCPU time
TotalPer 24 hrsMeanMedianRangeMeanMedianRangeMeanMedianRange
Last 1 days0
Last 7 days41 5.86 27.63144-137 1979.63861114-21282 478.3223651-2979
Last 30 days55 1.83 34.40244-137 2700.95918114-21282 1001.2431251-5192
Lifetime (5410 days)76271 14.10 26.95182-300 2046.33111620-46625 1292.433861-272974

Top 10 models usedDistribution of delta AICNumber of inferred breakpoints
ModelTimes Used% Used
064582 84.7
HKY855991 7.9
010000860 1.1
REV830 1.1
TRN93558 0.7
F81520 0.7
010232226 0.3
012212218 0.3
010230182 0.2
012232144 0.2
delta AIC rangeTimes found% found
0-1027782 36.4
10-203032 4.0
20-302445 3.2
30-402276 3.0
40-501871 2.5
50-601977 2.6
60-701454 1.9
70-801325 1.7
80-901228 1.6
90-1001088 1.4
> 10031793 41.7
Number of breakpointsTimes found% found
023399 30.7
119270 25.3
212096 15.9
37037 9.2
44283 5.6
52947 3.9
61903 2.5
71419 1.9
8940 1.2
9762 1.0
≥ 102215 2.9

SBP

SBP usage summary as of Tue Sep 21 00:00:56 2021 PST.

TimeframeAnalysesSequencesSitesCPU time
TotalPer 24 hrsMeanMedianRangeMeanMedianRangeMeanMedianRange
Last 1 days0
Last 7 days1 0.14119119119-119999-9932932932-932
Last 30 days8 0.27 48.38465-119631-22435 334.502-932
Lifetime (3057 days)21324 6.98 50.60252-656 21.7911-45015 636.88450-683633

Top 10 models usedDistribution of IC improvement
ModelTimes Used% Used
HKY8515461 72.5
REV1315 6.2
010000565 2.6
F81503 2.4
TRN93502 2.4
0123455306 1.4
010232215 1.0
012012137 0.6
0112304567125 0.6
010230105 0.5
IC improvement rangeTimes found% found
0-109224 43.3
10-20917 4.3
20-30806 3.8
30-40658 3.1
40-50520 2.4
50-60416 2.0
60-70361 1.7
70-80379 1.8
80-90295 1.4
90-100329 1.5
> 1007419 34.8

PARRIS

PARRIS usage summary as of Tue Sep 21 00:00:59 2021 PST.

TimeframeAnalysesSequencesSitesCPU time
TotalPer 24 hrsMeanMedianRangeMeanMedianRangeMeanMedianRange
Last 1 days0
Last 7 days43 6.14 10.09104-30 1146.30932176-4283 195.51597-2396
Last 30 days44 1.47 10.75104-39 1123.45927141-4283 192.18587-2396
Lifetime (5165 days)14651 2.84 20.09153-75 491.543297-11903 424.861361-48648

Top 10 models usedDistribution of p-values
ModelTimes Used% Used
HKY858312 56.7
F811080 7.4
REV1011 6.9
TRN93777 5.3
010000429 2.9
012012262 1.8
001101166 1.1
012212155 1.1
012032137 0.9
010230125 0.9
p-values rangeTimes found% found
0-0.12673 18.2
0.1-0.2518 3.5
0.2-0.3478 3.3
0.3-0.4373 2.5
0.4-0.5332 2.3
0.5-0.6393 2.7
0.6-0.7374 2.6
0.7-0.8360 2.5
0.8-0.9355 2.4
0.9-18795 60.0

GA Branch

GABranch usage summary as of Tue Sep 21 00:01:01 2021 PST.

TimeframeAnalysesSequencesSitesCPU time
TotalPer 24 hrsMeanMedianRangeMeanMedianRangeMeanMedianRange
Last 1 days0
Last 7 days0
Last 30 days1 0.03242424-24233233233-233430343034303-4303
Lifetime (5158 days)11883 2.30 13.75123-30 522.493339-11628 5653.9315191-889396

Top 10 models usedDistribution of the number of dN/dS classes
ModelTimes Used% Used
HKY858610 72.5
REV614 5.2
010000568 4.8
F81415 3.5
TRN93285 2.4
012012131 1.1
001101107 0.9
01221264 0.5
01001263 0.5
00001060 0.5
the number of dN/dS classes rangeTimes found% found
199 0.8
24316 36.3
34022 33.8
42241 18.9
5780 6.6
6238 2.0
7119 1.0
840 0.3
928 0.2

CMS

CMS usage summary as of Tue Sep 21 00:01:03 2021 PST.

TimeframeAnalysesSequencesSitesCPU time
TotalPer 24 hrsMeanMedianRangeMeanMedianRangeMeanMedianRange
Last 1 days0
Last 7 days1 0.14444-4119111911191-1191571571571-571
Last 30 days4 0.13 24.25274-39 736.50712141-138111665.753064571-39964
Lifetime (4249 days)3324 0.78 33.62243-120 572.323487-1127621112.95407059-3262277

Distribution of mBIC improvementNumber of inferred rate classes
mBIC improvement rangeTimes found% found
0-10193 5.8
10-20152 4.6
20-30194 5.8
30-40223 6.7
40-50250 7.5
50-60184 5.5
60-70179 5.4
70-80130 3.9
80-90179 5.4
90-100111 3.3
> 1001529 46.0
Number of rate classesTimes found% found
10 0.0
22080 62.6
3729 21.9
4286 8.6
5123 3.7
653 1.6
716 0.5
82 0.1
91 0.0
≥ 1034 1.0

DEPS

DEPS usage summary as of Tue Sep 21 00:01:04 2021 PST.

TimeframeAnalysesSequencesSitesCPU time
TotalPer 24 hrsMeanMedianRangeMeanMedianRangeMeanMedianRange
Last 1 days0
Last 7 days1 0.14464646-46355135513551-3551263263263-263
Last 30 days29 0.97 37.07334-87 9589.4898053551-9812 173.4812720-472
Lifetime (4128 days)3722 0.90 36.01313-100 1074.195569-11100 478.321442-31585

Subtyping

SCUEAL usage summary as of Tue Sep 21 00:01:05 2021 PST.

Timeframe Analyses Sequences
TotalPer 24 hrsMeanMedianRange
Last 1 days71637163.00 90.0840-500
Last 7 days71631023.29 90.0840-500
Last 30 days7163238.77 90.0840-500
Lifetime (4463 days)8467 1.90 93.4350-500

Top 10 Subtypes (out of 791080 sequences)

SubtypesTimes found% found
B312517 39.5
C152618 19.3
G51673 6.5
A146724 5.9
Complex33102 4.2
AE20787 2.6
D19766 2.5
CRF1412918 1.6
F112543 1.6
B,C recombinant9836 1.2

Coevolution

BGM usage summary as of Tue Sep 21 00:01:08 2021 PST.

TimeframeAnalysesSitesInteracting pairs/siteCPU time
TotalPer 24 hrsMeanMedianRangeMeanMedianRangeMeanMedianRange
Last 1 days0
Last 7 days0
Last 30 days0
Lifetime (3057 days)8881 2.91 65.10300-1033 2.25 0.98 0.01-263 2866.47920-2900666

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