Timeframe | Analyses | Sequences | Sites | CPU time | |||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Total | Per 24 hrs | Mean | Median | Range | Mean | Median | Range | Mean | Median | Range | |
Last 1 days | 0 | ||||||||||
Last 7 days | 0 | ||||||||||
Last 30 days | 0 | ||||||||||
Lifetime (3756 days) | 92479 | 24.62 | 53.07 | 25 | 3-684 | 490.95 | 325 | 1-11903 | 21.25 | 6.16 | 0.16- 7571.98 |
Models used | Test results by p-value | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Timeframe | Analyses | Sequences | Sites | CPU time | |||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Total | Per 24 hrs | Mean | Median | Range | Mean | Median | Range | Mean | Median | Range | |
Last 1 days | 1 | 1.00 | 38 | 38 | 38-38 | 161 | 161 | 161-161 | 397 | 397 | 397-397 |
Last 7 days | 30 | 4.29 | 33.20 | 18 | 7-185 | 524.30 | 164.50 | 154-2694 | 1058.60 | 260.50 | 39-6286 |
Last 30 days | 91 | 3.03 | 47.30 | 19 | 4-490 | 610.63 | 237 | 35-4401 | 434.65 | 69 | 2-6286 |
Lifetime (2856 days) | 103888 | 36.38 | 44.54 | 24 | 3-787 | 488.02 | 325 | 1-11276 | 181.82 | 46 | 0-51470 |
Models used | Test results by p-value | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Timeframe | Analyses | Sequences | Sites | CPU time | |||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Total | Per 24 hrs | Mean | Median | Range | Mean | Median | Range | Mean | Median | Range | |
Last 1 days | 0 | ||||||||||
Last 7 days | 4 | 0.57 | 21.50 | 18 | 16-34 | 761 | 343 | 154-2204 | 221.75 | 155 | 88-489 |
Last 30 days | 16 | 0.53 | 21.62 | 19.50 | 4-53 | 602.38 | 536 | 35-2204 | 120.12 | 65.50 | 0-489 |
Lifetime (2855 days) | 58137 | 20.36 | 20.71 | 16 | 2-110 | 488.34 | 323 | 1-11542 | 390.02 | 111 | 0-54132 |
Models used | Test results by Bayes Factor | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Timeframe | Analyses | Sequences | Sites | CPU time | |||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Total | Per 24 hrs | Mean | Median | Range | Mean | Median | Range | Mean | Median | Range | |
Last 1 days | 0 | ||||||||||
Last 7 days | 0 | ||||||||||
Last 30 days | 0 | ||||||||||
Lifetime (3936 days) | 1092 | 0.28 | 47.53 | 37 | 7-150 | 568.73 | 350 | 16-3789 | 3765.88 | 1970.50 | 31-42841 |
Timeframe | Analyses | Sequences | Sites | |||||
---|---|---|---|---|---|---|---|---|
Total | Per 24 hrs | Mean | Median | Range | Mean | Median | Range | |
Last 1 days | 2 | 2.00 | 14 | 14 | 14-14 | 486 | 486 | 486-486 |
Last 7 days | 36 | 5.14 | 14.31 | 7 | 3-107 | 194.64 | 84 | 13-2204 |
Last 30 days | 104 | 3.47 | 33.15 | 18 | 3-490 | 817.94 | 180 | 13-4401 |
Lifetime (2856 days) | 102541 | 35.90 | 43.80 | 22 | 3-656 | 523.01 | 325 | 1-11935 |
Model | Times selected | % selected |
---|---|---|
HKY85 | 24628 | 24.0 |
TRN93 | 13100 | 12.8 |
F81 | 8937 | 8.7 |
010232 | 4382 | 4.3 |
012012 | 3590 | 3.5 |
012212 | 3098 | 3.0 |
010230 | 2485 | 2.4 |
012232 | 2435 | 2.4 |
012032 | 2434 | 2.4 |
001101 | 2115 | 2.1 |
Timeframe | Analyses | Sequences | Sites | |||||||
---|---|---|---|---|---|---|---|---|---|---|
Total | Per 24 hrs | Mean | Median | Range | Mean | Median | Range | |||
Last 1 days | 0 | |||||||||
Last 7 days | 0 | |||||||||
Last 30 days | 0 | |||||||||
Lifetime (4657 days) | 3945 | 0.85 | 46.55 | 25 | 2-500 | 674.71 | 444 | 3-18120 |
Model | Times selected | % selected |
---|---|---|
JTT (Jones,Taylor,Thornton)+F | 567 | 14.4 |
JTT (Jones,Taylor,Thornton) | 410 | 10.4 |
BLOSUM62+F | 327 | 8.3 |
WAG (Whelan and Goldman)+F | 325 | 8.2 |
HIV (within host)+F | 272 | 6.9 |
WAG (Whelan and Goldman) | 245 | 6.2 |
IAV (Influenza A virus)+F | 243 | 6.2 |
IAV (Influenza A virus) | 228 | 5.8 |
BLOSUM62 | 169 | 4.3 |
LG (Le and Gascuel) | 168 | 4.3 |
Timeframe | Analyses | Sequences | Sites | CPU time | |||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Total | Per 24 hrs | Mean | Median | Range | Mean | Median | Range | Mean | Median | Range | |
Last 1 days | 0 | ||||||||||
Last 7 days | 27 | 3.86 | 6.07 | 6 | 3-9 | 253.33 | 240 | 39-654 | 140.93 | 174 | 49-284 |
Last 30 days | 55 | 1.83 | 13.27 | 7 | 3-36 | 2411.65 | 378 | 39-12000 | 907.18 | 190 | 49-4339 |
Lifetime (5209 days) | 76077 | 14.60 | 26.94 | 18 | 2-300 | 2044.46 | 1116 | 20-46625 | 1292.32 | 386 | 1-272974 |
Top 10 models used | Distribution of delta AIC | Number of inferred breakpoints | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Timeframe | Analyses | Sequences | Sites | CPU time | |||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Total | Per 24 hrs | Mean | Median | Range | Mean | Median | Range | Mean | Median | Range | |
Last 1 days | 1 | 1.00 | 7 | 7 | 7-7 | 3 | 3 | 3-3 | 3 | 3 | 3-3 |
Last 7 days | 7 | 1.00 | 22 | 18 | 4-58 | 64.57 | 3 | 1-203 | 180.29 | 8 | 2-923 |
Last 30 days | 21 | 0.70 | 83.62 | 18 | 3-431 | 45.19 | 3 | 1-258 | 3454.57 | 276 | 2-42886 |
Lifetime (2856 days) | 21231 | 7.43 | 50.26 | 25 | 2-656 | 21.75 | 1 | 1-45015 | 606.18 | 44 | 0-683633 |
Top 10 models used | Distribution of IC improvement | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Timeframe | Analyses | Sequences | Sites | CPU time | |||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Total | Per 24 hrs | Mean | Median | Range | Mean | Median | Range | Mean | Median | Range | |
Last 1 days | 0 | ||||||||||
Last 7 days | 5 | 0.71 | 21.20 | 18 | 18-33 | 696.20 | 154 | 154-1538 | 143 | 95 | 80-322 |
Last 30 days | 6 | 0.20 | 26.50 | 18.50 | 18-53 | 609 | 163.50 | 154-1538 | 148 | 115.50 | 80-322 |
Lifetime (4964 days) | 14597 | 2.94 | 20.12 | 15 | 3-75 | 489.66 | 329 | 7-11903 | 425.73 | 136 | 1-48648 |
Top 10 models used | Distribution of p-values | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Timeframe | Analyses | Sequences | Sites | CPU time | |||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Total | Per 24 hrs | Mean | Median | Range | Mean | Median | Range | Mean | Median | Range | |
Last 1 days | 0 | ||||||||||
Last 7 days | 1 | 0.14 | 16 | 16 | 16-16 | 2204 | 2204 | 2204-2204 | 9594 | 9594 | 9594-9594 |
Last 30 days | 2 | 0.07 | 16 | 16 | 16-16 | 1150 | 1150 | 96-2204 | 5302.50 | 5302.50 | 1011-9594 |
Lifetime (4957 days) | 11862 | 2.39 | 13.74 | 12 | 3-30 | 522.49 | 333 | 9-11628 | 5656.44 | 1519 | 1-889396 |
Top 10 models used | Distribution of the number of dN/dS classes | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Timeframe | Analyses | Sequences | Sites | CPU time | |||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Total | Per 24 hrs | Mean | Median | Range | Mean | Median | Range | Mean | Median | Range | |
Last 1 days | 0 | ||||||||||
Last 7 days | 0 | ||||||||||
Last 30 days | 1 | 0.03 | 36 | 36 | 36-36 | 554 | 554 | 554-554 | 24157 | 24157 | 24157-24157 |
Lifetime (4048 days) | 3289 | 0.81 | 33.72 | 24 | 3-120 | 571.09 | 345 | 7-11276 | 21145.27 | 4048 | 59-3262277 |
Distribution of mBIC improvement | Number of inferred rate classes | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Timeframe | Analyses | Sequences | Sites | CPU time | |||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Total | Per 24 hrs | Mean | Median | Range | Mean | Median | Range | Mean | Median | Range | |
Last 1 days | 0 | ||||||||||
Last 7 days | 0 | ||||||||||
Last 30 days | 0 | ||||||||||
Lifetime (3927 days) | 3577 | 0.91 | 35.84 | 32 | 3-100 | 733.17 | 528 | 9-11100 | 489.42 | 146 | 2-31585 |
Timeframe | Analyses | Sequences | |||
---|---|---|---|---|---|
Total | Per 24 hrs | Mean | Median | Range | |
Last 1 days | 7046 | 7046.00 | 91.19 | 4 | 0-500 |
Last 7 days | 7046 | 1006.57 | 91.19 | 4 | 0-500 |
Last 30 days | 7046 | 234.87 | 91.19 | 4 | 0-500 |
Lifetime (4262 days) | 8350 | 1.96 | 94.42 | 5 | 0-500 |
Subtypes | Times found | % found |
---|---|---|
B | 311731 | 39.5 |
C | 152323 | 19.3 |
G | 51491 | 6.5 |
A1 | 46605 | 5.9 |
Complex | 32843 | 4.2 |
AE | 20769 | 2.6 |
D | 19699 | 2.5 |
CRF14 | 12916 | 1.6 |
F1 | 12364 | 1.6 |
B,C recombinant | 9784 | 1.2 |
Timeframe | Analyses | Sites | Interacting pairs/site | CPU time | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Total | Per 24 hrs | Mean | Median | Range | Mean | Median | Range | Mean | Median | Range | |||
Last 1 days | 0 | ||||||||||||
Last 7 days | 0 | ||||||||||||
Last 30 days | 0 | ||||||||||||
Lifetime (2856 days) | 8881 | 3.11 | 65.10 | 30 | 0-1033 | 2.25 | 0.98 | 0.01-263 | 2866.47 | 92 | 0-2900666 |