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SLAC

SLAC usage summary as of Thu Mar 4 00:00:01 2021 PST.

TimeframeAnalysesSequencesSitesCPU time
TotalPer 24 hrsMeanMedianRangeMeanMedianRangeMeanMedianRange
Last 1 days0
Last 7 days0
Last 30 days0
Lifetime (3756 days)92479 24.62 53.07253-684 490.953251-11903 21.25 6.16 0.16- 7571.98

Top 10

Models usedTest results by p-value
ModelTimes Used% Used
HKY8547511 51.4
TRN9313462 14.6
REV9543 10.3
F814265 4.6
0102301079 1.2
0120121076 1.2
0122121060 1.1
0102321010 1.1
012232856 0.9
012032760 0.8
p-valueSelected/100 codonsTimes Used% Used
PositiveNegative
0.1 0.6 16.277137 83.4
0.05 0.5 14.111486 12.4
0.2 0.9 18.41381 1.5
0.25 2.2 24.8776 0.8
0.5 4.3 55.2659 0.7
0.01 0.8 9.6540 0.6
0.15 2.2 15.2115 0.1
0.3 0.2 18.151 0.1
0.0024 0.0 2.345 0.0
0.0048 0.0 0.533 0.0

FEL

FEL usage summary as of Thu Mar 4 00:00:15 2021 PST.

TimeframeAnalysesSequencesSitesCPU time
TotalPer 24 hrsMeanMedianRangeMeanMedianRangeMeanMedianRange
Last 1 days1 1.00383838-38161161161-161397397397-397
Last 7 days30 4.29 33.20187-185 524.30 164.50154-2694 1058.60 260.5039-6286
Last 30 days91 3.03 47.30194-490 610.6323735-4401 434.65692-6286
Lifetime (2856 days)103888 36.38 44.54243-787 488.023251-11276 181.82460-51470

Top 10

Models usedTest results by p-value
ModelTimes Used% Used
HKY8547219 45.5
REV13335 12.8
TRN9310156 9.8
F815435 5.2
0100003929 3.8
0102322094 2.0
0120121582 1.5
0122121405 1.4
0102301269 1.2
0120321005 1.0
p-valueSelected/100 codonsTimes Used% Used
PositiveNegative
0.1 1.1 24.084000 80.9
0.05 0.9 19.115363 14.8
0.2 2.1 29.72136 2.1
0.25 3.1 31.9942 0.9
0.01 0.4 14.7523 0.5
0.5 5.9 43.2214 0.2
0.15 2.2 22.9182 0.2
0.0024 0.0 7.0102 0.1
0.3 1.2 23.364 0.1
0.06 0.3 22.560 0.1

REL

REL usage summary as of Thu Mar 4 00:00:30 2021 PST.

TimeframeAnalysesSequencesSitesCPU time
TotalPer 24 hrsMeanMedianRangeMeanMedianRangeMeanMedianRange
Last 1 days0
Last 7 days4 0.57 21.501816-34761343154-2204 221.7515588-489
Last 30 days16 0.53 21.62 19.504-53 602.3853635-2204 120.12 65.500-489
Lifetime (2855 days)58137 20.36 20.71162-110 488.343231-11542 390.021110-54132

Top 10

Models usedTest results by Bayes Factor
ModelTimes Used% Used
HKY8530917 53.2
REV5702 9.8
F813543 6.1
TRN933373 5.8
0100002345 4.0
0120121223 2.1
001101730 1.3
012212718 1.2
010232709 1.2
012032619 1.1
Bayes FactorSelected/100 codonsTimes Used% Used
PositiveNegative
50 4.3 27.852554 90.4
100 4.4 22.11318 2.3
90 19.2 11.2901 1.5
20 7.2 36.0826 1.4
95 2.4 31.6767 1.3
10 5.8 31.9747 1.3
40 2.5 24.4145 0.2
25 7.8 34.7115 0.2
80 3.0 28.9111 0.2
30 9.8 20.693 0.2

TOGGLE

Toggle usage summary as of Thu Mar 4 00:00:39 2021 PST.

TimeframeAnalysesSequencesSitesCPU time
TotalPer 24 hrsMeanMedianRangeMeanMedianRangeMeanMedianRange
Last 1 days0
Last 7 days0
Last 30 days0
Lifetime (3936 days)1092 0.28 47.53377-150 568.7335016-3789 3765.88 1970.5031-42841

Model Select.

ModelSelection usage summary as of Thu Mar 4 00:00:41 2021 PST.

TimeframeAnalysesSequencesSites
TotalPer 24 hrsMeanMedianRangeMeanMedianRange
Last 1 days2 2.00141414-14486486486-486
Last 7 days36 5.14 14.3173-107 194.648413-2204
Last 30 days104 3.47 33.15183-490 817.9418013-4401
Lifetime (2856 days)102541 35.90 43.80223-656 523.013251-11935

Top 10 Models

ModelTimes selected% selected
HKY8524628 24.0
TRN9313100 12.8
F818937 8.7
0102324382 4.3
0120123590 3.5
0122123098 3.0
0102302485 2.4
0122322435 2.4
0120322434 2.4
0011012115 2.1

Protein Model Select.

ModelSelectionP usage summary as of Thu Mar 4 00:00:51 2021 PST.

TimeframeAnalysesSequencesSites
TotalPer 24 hrsMeanMedianRangeMeanMedianRange
Last 1 days0
Last 7 days0
Last 30 days0
Lifetime (4657 days)3945 0.85 46.55252-500 674.714443-18120

Top 10 Models

ModelTimes selected% selected
JTT (Jones,Taylor,Thornton)+F567 14.4
JTT (Jones,Taylor,Thornton)410 10.4
BLOSUM62+F327 8.3
WAG (Whelan and Goldman)+F325 8.2
HIV (within host)+F272 6.9
WAG (Whelan and Goldman)245 6.2
IAV (Influenza A virus)+F243 6.2
IAV (Influenza A virus)228 5.8
BLOSUM62169 4.3
LG (Le and Gascuel)168 4.3

GARD

GARD usage summary as of Thu Mar 4 00:00:53 2021 PST.

TimeframeAnalysesSequencesSitesCPU time
TotalPer 24 hrsMeanMedianRangeMeanMedianRangeMeanMedianRange
Last 1 days0
Last 7 days27 3.86 6.0763-9 253.3324039-654 140.9317449-284
Last 30 days55 1.83 13.2773-36 2411.6537839-12000 907.1819049-4339
Lifetime (5209 days)76077 14.60 26.94182-300 2044.46111620-46625 1292.323861-272974

Top 10 models usedDistribution of delta AICNumber of inferred breakpoints
ModelTimes Used% Used
064388 84.6
HKY855991 7.9
010000860 1.1
REV830 1.1
TRN93558 0.7
F81520 0.7
010232226 0.3
012212218 0.3
010230182 0.2
012232144 0.2
delta AIC rangeTimes found% found
0-1027668 36.4
10-203031 4.0
20-302443 3.2
30-402275 3.0
40-501870 2.5
50-601975 2.6
60-701453 1.9
70-801325 1.7
80-901226 1.6
90-1001088 1.4
> 10031723 41.7
Number of breakpointsTimes found% found
023289 30.6
119243 25.3
212072 15.9
37020 9.2
44275 5.6
52943 3.9
61901 2.5
71418 1.9
8940 1.2
9761 1.0
≥ 102215 2.9

SBP

SBP usage summary as of Thu Mar 4 00:01:05 2021 PST.

TimeframeAnalysesSequencesSitesCPU time
TotalPer 24 hrsMeanMedianRangeMeanMedianRangeMeanMedianRange
Last 1 days1 1.00777-7333-3333-3
Last 7 days7 1.0022184-58 64.5731-203 180.2982-923
Last 30 days21 0.70 83.62183-431 45.1931-258 3454.572762-42886
Lifetime (2856 days)21231 7.43 50.26252-656 21.7511-45015 606.18440-683633

Top 10 models usedDistribution of IC improvement
ModelTimes Used% Used
HKY8515398 72.5
REV1315 6.2
010000565 2.7
F81503 2.4
TRN93502 2.4
0123455287 1.4
010232215 1.0
012012137 0.6
0112304567122 0.6
010230105 0.5
IC improvement rangeTimes found% found
0-109190 43.3
10-20915 4.3
20-30803 3.8
30-40658 3.1
40-50520 2.4
50-60413 1.9
60-70361 1.7
70-80378 1.8
80-90293 1.4
90-100329 1.5
> 1007371 34.7

PARRIS

PARRIS usage summary as of Thu Mar 4 00:01:09 2021 PST.

TimeframeAnalysesSequencesSitesCPU time
TotalPer 24 hrsMeanMedianRangeMeanMedianRangeMeanMedianRange
Last 1 days0
Last 7 days5 0.71 21.201818-33 696.20154154-15381439580-322
Last 30 days6 0.20 26.50 18.5018-53609 163.50154-1538148 115.5080-322
Lifetime (4964 days)14597 2.94 20.12153-75 489.663297-11903 425.731361-48648

Top 10 models usedDistribution of p-values
ModelTimes Used% Used
HKY858258 56.6
F811080 7.4
REV1011 6.9
TRN93777 5.3
010000429 2.9
012012262 1.8
001101166 1.1
012212155 1.1
012032137 0.9
010230125 0.9
p-values rangeTimes found% found
0-0.12668 18.3
0.1-0.2518 3.5
0.2-0.3475 3.3
0.3-0.4372 2.5
0.4-0.5331 2.3
0.5-0.6393 2.7
0.6-0.7373 2.6
0.7-0.8359 2.5
0.8-0.9355 2.4
0.9-18753 60.0

GA Branch

GABranch usage summary as of Thu Mar 4 00:01:11 2021 PST.

TimeframeAnalysesSequencesSitesCPU time
TotalPer 24 hrsMeanMedianRangeMeanMedianRangeMeanMedianRange
Last 1 days0
Last 7 days1 0.14161616-16220422042204-2204959495949594-9594
Last 30 days2 0.07161616-161150115096-2204 5302.50 5302.501011-9594
Lifetime (4957 days)11862 2.39 13.74123-30 522.493339-11628 5656.4415191-889396

Top 10 models usedDistribution of the number of dN/dS classes
ModelTimes Used% Used
HKY858589 72.4
REV614 5.2
010000568 4.8
F81415 3.5
TRN93285 2.4
012012131 1.1
001101107 0.9
01221264 0.5
01001263 0.5
00001060 0.5
the number of dN/dS classes rangeTimes found% found
199 0.8
24314 36.4
34011 33.8
42235 18.8
5780 6.6
6238 2.0
7119 1.0
839 0.3
927 0.2

CMS

CMS usage summary as of Thu Mar 4 00:01:13 2021 PST.

TimeframeAnalysesSequencesSitesCPU time
TotalPer 24 hrsMeanMedianRangeMeanMedianRangeMeanMedianRange
Last 1 days0
Last 7 days0
Last 30 days1 0.03363636-36554554554-554241572415724157-24157
Lifetime (4048 days)3289 0.81 33.72243-120 571.093457-1127621145.27404859-3262277

Distribution of mBIC improvementNumber of inferred rate classes
mBIC improvement rangeTimes found% found
0-10192 5.8
10-20151 4.6
20-30193 5.9
30-40222 6.7
40-50249 7.6
50-60180 5.5
60-70177 5.4
70-80129 3.9
80-90178 5.4
90-100111 3.4
> 1001507 45.8
Number of rate classesTimes found% found
10 0.0
22064 62.8
3720 21.9
4282 8.6
5120 3.6
651 1.6
715 0.5
82 0.1
91 0.0
≥ 1034 1.0

DEPS

DEPS usage summary as of Thu Mar 4 00:01:14 2021 PST.

TimeframeAnalysesSequencesSitesCPU time
TotalPer 24 hrsMeanMedianRangeMeanMedianRangeMeanMedianRange
Last 1 days0
Last 7 days0
Last 30 days0
Lifetime (3927 days)3577 0.91 35.84323-100 733.175289-11100 489.421462-31585

Subtyping

SCUEAL usage summary as of Thu Mar 4 00:01:15 2021 PST.

Timeframe Analyses Sequences
TotalPer 24 hrsMeanMedianRange
Last 1 days70467046.00 91.1940-500
Last 7 days70461006.57 91.1940-500
Last 30 days7046234.87 91.1940-500
Lifetime (4262 days)8350 1.96 94.4250-500

Top 10 Subtypes (out of 788389 sequences)

SubtypesTimes found% found
B311731 39.5
C152323 19.3
G51491 6.5
A146605 5.9
Complex32843 4.2
AE20769 2.6
D19699 2.5
CRF1412916 1.6
F112364 1.6
B,C recombinant9784 1.2

Coevolution

BGM usage summary as of Thu Mar 4 00:01:18 2021 PST.

TimeframeAnalysesSitesInteracting pairs/siteCPU time
TotalPer 24 hrsMeanMedianRangeMeanMedianRangeMeanMedianRange
Last 1 days0
Last 7 days0
Last 30 days0
Lifetime (2856 days)8881 3.11 65.10300-1033 2.25 0.98 0.01-263 2866.47920-2900666

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